R

repo: qinwf/awesome-R
category: Programming Languages related: Data Science · Machine Learning

Awesome R

A curated list of awesome R packages and tools. Inspired by awesome-machine-learning.

<p><img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> for <a target="_blank" href="https://github.com/rstudio/RStartHere/blob/master/top_downloads_2016/top_packages">Top 50</a> CRAN downloaded packages or repos with 400+ <img class="emoji" alt="star" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/star.png" height="20" align="absmiddle" width="20"></p>

Awesome R
Resources
- Websites
- Books
- Podcasts
- Reference Cards
- MOOCs
- Lists
[Other Awesome Lists](#other-awesome-lists)
Contributing

2023

Cookbook Polars for R

2020

VSCode - vscode-R + vscode-r-lsp VSCode R Langauage Support
gt - Easily generate information-rich, publication-quality tables from R
lightgbm <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Light Gradient Boosting Machine.
torch - Tensors and Neural Networks with 'GPU' Acceleration.

2019

ggforce - ggplot2 extension framework
rayshader - 2D and 3D data visualizations via rgl
vroom - Fast reading of delimited files

Integrated Development Environments

Integrated Development Environment

VSCode <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - vscode-R + vscode-r-lsp VSCode R Langauage Support
RStudio <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - A powerful and productive user interface for R. Works great on Windows, Mac, and Linux.
Emacs + ESS - Emacs Speaks Statistics is an add-on package for emacs text editors.
Sublime Text + R-IDE - Add-on package for Sublime Text 2/3.
TextMate + r.tmblundle - Add-on package for TextMate 1/2.
StatET - An Eclipse based IDE for R.
R Commander - A package that provides a basic graphical user interface.
IRkernel <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - R kernel for Jupyter.
Deducer - A Menu driven data analysis GUI with a spreadsheet like data editor.
Radiant - A platform-independent browser-based interface for business analytics in R, based on the Shiny.
Nvim-R <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Neovim plugin for R.
Jamovi and JASP - Desktop software for both Bayesian and Frequentist methods, using a UI familiar to SPSS users.
Bio7 - An IDE contains tools for model creation, scientific image analysis and statistical analysis for ecological modelling.
RTVS - R Tools for Visual Studio.
radian <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> (formerly rtichoke) - A modern R console with syntax highlighting.
RKWard - An extensible IDE/GUI for R.

Syntax

Packages change the way you use R.

magrittr <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Let's pipe it.
pipeR - Multi-paradigm Pipeline Implementation.
lambda.r - Functional programming and simple pattern matching in R.
purrr - A FP package for R in the spirit of underscore.js.

Data Manipulation

Packages for cooking data.

dplyr <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Fast data frames manipulation and database query.
data.table <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Fast data manipulation in a short and flexible syntax.
reshape2 <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Flexible rearrange, reshape and aggregate data.
tidyr - Easily tidy data with spread and gather functions.
broom <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Convert statistical analysis objects into tidy data frames.
rlist - A toolbox for non-tabular data manipulation with lists.
ff - Data structures designed to store large datasets.
lubridate - A set of functions to work with dates and times.
stringi <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - ICU based string processing package.
stringr <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Consistent API for string processing, built on top of stringi.
bigmemory - Shared memory and memory-mapped matrices. The big* packages provide additional tools including linear models (biglm) and Random Forests (bigrf).
fuzzyjoin - Join tables together on inexact matching.
tidyverse - Easily install and load packages from the tidyverse.
snakecase - Automatically parse and convert strings into cases like snake or camel among others.
DataExplorer - Fast exploratory data analysis with minimum code.

Data Formats

Packages for reading and writing data of different formats.

arrow <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - An interface to the Arrow C++ library.
feather <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Fast, interoperable binary data frame storage for Python, R, and more powered by Apache Arrow.
fst <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Lightning Fast Serialization of Data Frames for R.
haven - Improved methods to import SPSS, Stata and SAS files in R.
jsonlite - A robust and quick way to parse JSON files in R.
qs - Quick serialization of R objects.
readxl <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Read excel files (.xls and .xlsx) into R.
readr <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - A fast and friendly way to read tabular data into R.
rio - A Swiss-Army Knife for Data I/O.
readODS - Read OpenDocument Spreadsheets into R as data.frames.
RcppTOML - Rcpp Bindings to C++ parser for TOML files.
vroom - Fast reading of delimited files.
writexl - Portable, light-weight data frame to xlsx exporter for R.
yaml - R package for converting objects to and from YAML.

Graphic Displays

Packages for showing data.

ggplot2 <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - An implementation of the Grammar of Graphics.
ggfortify - A unified interface to ggplot2 popular statistical packages using one line of code.
ggrepel - Repel overlapping text labels away from each other.
ggalt - Extra Coordinate Systems, Geoms and Statistical Transformations for ggplot2.
ggstatsplot - ggplot2 Based Plots with Statistical Details
ggtree - Visualization and annotation of phylogenetic tree.
ggtech - ggplot2 tech themes and scales
ggplot2 Extensions - Showcases of ggplot2 extensions.
lattice - A powerful and elegant high-level data visualization system.
corrplot - A graphical display of a correlation matrix or general matrix. It also contains some algorithms to do matrix reordering.
rgl - 3D visualization device system for R.
Cairo - R graphics device using cairo graphics library for creating high-quality display output.
extrafont - Tools for using fonts in R graphics.
showtext - Enable R graphics device to show text using system fonts.
animation - A simple way to produce animated graphics in R, using ImageMagick.
gganimate - Create easy animations with ggplot2.
misc3d - Powerful functions to deal with 3d plots, isosurfaces, etc.
xkcd - Use xkcd style in graphs.
imager - An image processing package based on CImg library to work with images and display them.
hrbrthemes - 🔏 Opinionated, typographic-centric ggplot2 themes and theme components.
waffle - 🍁 Make waffle (square pie) charts in R.
dendextend - visualizing, adjusting and comparing trees of hierarchical clustering.
idendro - interactive exploration of dendrograms (trees of hierarchical clustering).
r2d3 - R Interface to D3 Visualizations
Patchwork - Combine separate ggplots into the same graphic.
plot3D - Plotting Multi-Dimensional Data
plot3Drgl - Plotting Multi-Dimensional Data - Using 'rgl'
httpgd - Asynchronous http server graphics device for R.

HTML Widgets

Packages for interactive visualizations.

heatmaply - Interactive heatmaps with D3.
d3heatmap - Interactive heatmaps with D3 (no longer maintained).
DataTables - Displays R matrices or data frames as interactive HTML tables.
DiagrammeR <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Create JS graph diagrams and flowcharts in R.
dygraphs - Charting time-series data in R.
formattable <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Formattable Data Structures.
ggvis <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Interactive grammar of graphics for R.
Leaflet - One of the most popular JavaScript libraries interactive maps.
MetricsGraphics - Enables easy creation of D3 scatterplots, line charts, and histograms.
networkD3 - D3 JavaScript Network Graphs from R.
scatterD3 - Interactive scatterplots with D3.
plotly <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Interactive ggplot2 and Shiny plotting with plot.ly.
rCharts <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Interactive JS Charts from R.
rbokeh - R Interface to Bokeh.
threejs - Interactive 3D scatter plots and globes.
timevis - Create fully interactive timeline visualizations.
visNetwork - Using vis.js library for network visualization.
wordcloud2 - R interface to wordcloud2.js.
highcharter - R wrapper for highcharts based on htmlwidgets
echarts4r - R wrapper to Echarts version 4

Reproducible Research

Packages for literate programming and reproducible workflows.

knitr <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Easy dynamic report generation in R.
redoc - Reversible Reproducible Documents
tinytex - A lightweight and easy-to-maintain LaTeX distribution
xtable - Export tables to LaTeX or HTML.
rapport - An R templating system.
rmarkdown <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Dynamic documents for R.
slidify <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Generate reproducible html5 slides from R markdown.
Sweave - A package designed to write LaTeX reports using R.
texreg - Formatting statistical models in LaTex and HTML.
checkpoint - Install packages from snapshots on the checkpoint server.
brew - Pre-compute data to enhance your report templates. Can be combined with knitr.
officer - An R package to generate Microsoft Word, Microsoft PowerPoint and HTML reports.
flextable - An R package to embed complex tables (merged cells, multi-level headers and footers, conditional formatting) in Microsoft Word, Microsoft PowerPoint and HTML reports. It cooperates with the [officer] package and integrates with [rmarkdown] reports.
bookdown - Authoring Books with R Markdown.
ezknitr - Avoid the typical working directory pain when using 'knitr'
targets - Make-like pipeline tool for organizing and running data science workflows, automatically skipping steps that have already been done. Supported by rOpenSci.
R Suite - A package to design flexible and reproducible deployment workflows for R.
kable - Build fancy HTML or 'LaTeX' tables using 'kable()' from 'knitr'.

Web Technologies and Services

Packages to surf the web.

Web Technologies List - Information about how to use R and the world wide web together.
shiny <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Easy interactive web applications with R. See also awesome-rshiny
shinyjs - Easily improve the user interaction and user experience in your Shiny apps in seconds.
RCurl - General network (HTTP/FTP/...) client interface for R.
curl - A Modern and Flexible Web Client for R.
httr <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - User-friendly RCurl wrapper.
httpuv - HTTP and WebSocket server library.
XML <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Tools for parsing and generating XML within R.
xml2 <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Optimized tools for parsing and generating XML within R.
rvest <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Simple web scraping for R, using CSSSelect or XPath syntax.
OpenCPU <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - HTTP API for R handling concurrent calls, based on the Apache2 web server, to expose R code as REST web services and create full-sized, multi-page web applications.
Rfacebook - Access to Facebook API via R.
RSiteCatalyst - R client library for the Adobe Analytics.
plumber - A library to expose existing R code as web API.
golem - A framework for building production-grade Shiny apps.

Parallel Computing

Packages for parallel computing.

parallel - R started with release 2.14.0 which includes a new package parallel incorporating (slightly revised) copies of packages multicore and snow.
Rmpi - Rmpi provides an interface (wrapper) to MPI APIs. It also provides interactive R slave environment.
foreach <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Executing the loop in parallel.
future <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - A minimal, efficient, cross-platform unified Future API for parallel and distributed processing in R; designed for beginners as well as advanced developers.
SparkR <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - R frontend for Spark.
DistributedR - A scalable high-performance platform from HP Vertica Analytics Team.
ddR - Provides distributed data structures and simplifies distributed computing in R.
sparklyr - R interface for Apache Spark from RStudio.
batchtools - High performance computing with LSF, TORQUE, Slurm, OpenLava, SGE and Docker Swarm.

High Performance

Packages for making R faster.

Rcpp <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Rcpp provides a powerful API on top of R, make function in R extremely faster.
Rcpp11 - Rcpp11 is a complete redesign of Rcpp, targetting C++11.
compiler - speeding up your R code using the JIT
cpp11 - cpp11 is a header-only R package that helps R package developers handle R objects with C++ code. It's similar to Rcpp but with different design trade-offs and features.

Language API

Packages for other languages.

rJava - Low-level R to Java interface.
jvmr - Integration of R, Java, and Scala.
reticulate <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Interface to 'Python'.
rJython - R interface to Python via Jython.
rPython - Package allowing R to call Python.
runr - Run Julia and Bash from R.
RJulia - R package Call Julia.
JuliaCall - Seamless Integration Between R and Julia.
RinRuby - a Ruby library that integrates the R interpreter in Ruby.
R.matlab - Read and write of MAT files together with R-to-MATLAB connectivity.
RcppOctave - Seamless Interface to Octave and Matlab.
RSPerl - A bidirectional interface for calling R from Perl and Perl from R.
V8 - Embedded JavaScript Engine.
htmlwidgets - Bring the best of JavaScript data visualization to R.
rpy2 - Python interface for R.

Database Management

Packages for managing data.

RODBC - ODBC database access for R.
DBI - Defines a common interface between the R and database management systems.
elastic - Wrapper for the Elasticsearch HTTP API
mongolite - Streaming Mongo Client for R
odbc - Connect to ODBC databases (using the DBI interface)
RMariaDB - An R interface to MariaDB (a replacement for the old RMySQL package)
RMySQL - R interface to the MySQL database.
ROracle - OCI based Oracle database interface for R.
RPostgres - an DBI-compliant interface to the postgres database.
RPostgreSQL - R interface to the PostgreSQL database system.
RSQLite - SQLite interface for R
RJDBC - Provides access to databases through the JDBC interface.
rmongodb - R driver for MongoDB.
redux - Redis client for R.
RCassandra - Direct interface (not Java) to the most basic functionality of Apache Cassandra.
RHive - R extension facilitating distributed computing via Apache Hive.
RNeo4j - Neo4j graph database driver.
rpostgis - R interface to PostGIS database and get spatial objects in R.

Machine Learning

Packages for making R cleverer.

anomalize - Tidy Anomaly Detection using Twitter's AnomalyDetection method.
AnomalyDetection <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - AnomalyDetection R package from Twitter.
ahaz - Regularization for semiparametric additive hazards regression.
arules - Mining Association Rules and Frequent Itemsets
bigrf - Big Random Forests: Classification and Regression Forests for Large Data Sets
bigRR - Generalized Ridge Regression (with special advantage for p >> n cases)
bmrm - Bundle Methods for Regularized Risk Minimization Package
Boruta - A wrapper algorithm for all-relevant feature selection
BreakoutDetection <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Breakout Detection via Robust E-Statistics from Twitter.
bst - Gradient Boosting
CausalImpact <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Causal inference using Bayesian structural time-series models.
C50 - C5.0 Decision Trees and Rule-Based Models
caret <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Classification and Regression Training
[Clever Algorithms For Machine Learning](https://github.com/jbrownlee/CleverAlgorithmsMachineLearning)
CORElearn - Classification, regression, feature evaluation and ordinal evaluation
CoxBoost - Cox models by likelihood based boosting for a single survival endpoint or competing risks
Cubist - Rule- and Instance-Based Regression Modeling
e1071 - Misc Functions of the Department of Statistics (e1071), TU Wien
earth - Multivariate Adaptive Regression Spline Models
elasticnet - Elastic-Net for Sparse Estimation and Sparse PCA
ElemStatLearn - Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
evtree - Evolutionary Learning of Globally Optimal Trees
fable - a collection of commonly used univariate and multivariate time series forecasting models
prophet <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth.
FSelector - A feature selection framework, based on subset-search or feature ranking approches.
frbs - Fuzzy Rule-based Systems for Classification and Regression Tasks
GAMBoost - Generalized linear and additive models by likelihood based boosting
gamboostLSS - Boosting Methods for GAMLSS
gbm - Generalized Boosted Regression Models
glmnet <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Lasso and elastic-net regularized generalized linear models
glmpath - L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
GMMBoost - Likelihood-based Boosting for Generalized mixed models
grplasso - Fitting user specified models with Group Lasso penalty
grpreg - Regularization paths for regression models with grouped covariates
h2o <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Deeplearning, Random forests, GBM, KMeans, PCA, GLM
hda - Heteroscedastic Discriminant Analysis
ipred - Improved Predictors
kernlab - kernlab: Kernel-based Machine Learning Lab
klaR - Classification and visualization
kohonen - Supervised and Unsupervised Self-Organising Maps.
L0Learn - Fast algorithms for best subset selection
lars - Least Angle Regression, Lasso and Forward Stagewise
lasso2 - L1 constrained estimation aka ‘lasso’
LiblineaR - Linear Predictive Models Based On The Liblinear C/C++ Library
lightgbm <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Light Gradient Boosting Machine.
lme4 <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Mixed-effects models
nlme <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Mixed-effects models, handling user-specified matrix of residual covariance, relevant for the analysis of repeated observations in longitudinal trials
glmmTMB - Generalized mixed-effects models, handling user-specified matrix of residual covariance, relevant for the analysis of repeated observations in longitudinal trials
LogicReg - Logic Regression
maptree - Mapping, pruning, and graphing tree models
mboost - Model-Based Boosting
[Machine Learning For Hackers <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20">](https://github.com/johnmyleswhite/ML_for_Hackers)
mlr - Extensible framework for classification, regression, survival analysis and clustering [DEPRECIATED]
mlr3 <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Next generation extensible framework for classification, regression, survival analysis and clustering
mvpart - Multivariate partitioning
MXNet <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - MXNet brings flexible and efficient GPU computing and state-of-art deep learning to R.
ncvreg - Regularization paths for SCAD- and MCP-penalized regression models
nnet - eed-forward Neural Networks and Multinomial Log-Linear Models
oblique.tree - Oblique Trees for Classification Data
pamr - Pam: prediction analysis for microarrays
party - A Laboratory for Recursive Partytioning
partykit - A Toolkit for Recursive Partytioning
penalized - L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
penalizedLDA - Penalized classification using Fisher's linear discriminant
penalizedSVM - Feature Selection SVM using penalty functions
quantregForest - quantregForest: Quantile Regression Forests
randomForest - randomForest: Breiman and Cutler's random forests for classification and regression.
randomForestSRC - randomForestSRC: Random Forests for Survival, Regression and Classification (RF-SRC).
ranger - A Fast Implementation of Random Forests.
rattle - Graphical user interface for data mining in R.
rda - Shrunken Centroids Regularized Discriminant Analysis
rdetools - Relevant Dimension Estimation (RDE) in Feature Spaces
REEMtree - Regression Trees with Random Effects for Longitudinal (Panel) Data
relaxo - Relaxed Lasso
rgenoud - R version of GENetic Optimization Using Derivatives
rgp - R genetic programming framework
Rmalschains - Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
rminer - Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
ROCR - Visualizing the performance of scoring classifiers
RoughSets - Data Analysis Using Rough Set and Fuzzy Rough Set Theories
rpart - Recursive Partitioning and Regression Trees
RPMM - Recursively Partitioned Mixture Model
RSNNS - Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
Rsomoclu - Parallel implementation of self-organizing maps.
RWeka - R/Weka interface
RXshrink - RXshrink: Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
sda - Shrinkage Discriminant Analysis and CAT Score Variable Selection
SDDA - Stepwise Diagonal Discriminant Analysis
SuperLearner and subsemble - Multi-algorithm ensemble learning packages.
survminer - Survival Analysis & Visualization
survival - Survival Analysis
svmpath - svmpath: the SVM Path algorithm
tgp - Bayesian treed Gaussian process models
tidymodels - A collection of packages for modeling and statistical analysis that share the underlying design philosophy, grammar, and data structures of the tidyverse.
torch - Tensors and Neural Networks with 'GPU' Acceleration.
tree - Classification and regression trees
varSelRF - Variable selection using random forests
xgboost <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - eXtreme Gradient Boosting Tree model, well known for its speed and performance.

Natural Language Processing

Packages for Natural Language Processing.

text2vec - Fast Text Mining Framework for Vectorization and Word Embeddings.
tm - A comprehensive text mining framework for R.
openNLP - Apache OpenNLP Tools Interface.
koRpus - An R Package for Text Analysis.
zipfR - Statistical models for word frequency distributions.
NLP - Basic functions for Natural Language Processing.
LDAvis - Interactive visualization of topic models.
topicmodels - Topic modeling interface to the C code developed by by David M. Blei for Topic Modeling (Latent Dirichlet Allocation (LDA), and Correlated Topics Models (CTM)).
syuzhet - Extracts sentiment from text using three different sentiment dictionaries.
SnowballC - Snowball stemmers based on the C libstemmer UTF-8 library.
quanteda - R functions for Quantitative Analysis of Textual Data.
Topic Models Resources - Topic Models learning and R related resources.
[NLP for <img src="https://assets-cdn.github.com/images/icons/emoji/unicode/1f1e8-1f1f3.png" width="20" heigth="20" align="absmiddle" class="emoji" alt=":cn:">](https://github.com/BZRLC/R-notes/blob/master/NLP/readme.md) - NLP related resources in R. @Chinese
MonkeyLearn - 🐒 R package for text analysis with Monkeylearn 🐒.
tidytext - Implementing tidy principles of Hadley Wickham to text mining.
utf8 - Manipulating and printing UTF-8 text that fixes multiple bugs in R's UTF-8 handling.
corporaexplorer - Dynamic exploration of text collections

Bayesian

Packages for Bayesian Inference.

brms - High-level interface for Bayesian regression models using Stan.
coda - Output analysis and diagnostics for MCMC.
mcmc - Markov Chain Monte Carlo.
MCMCpack - Markov chain Monte Carlo (MCMC) Package.
R2WinBUGS - Running WinBUGS and OpenBUGS from R / S-PLUS.
BRugs - R interface to the OpenBUGS MCMC software.
rjags - R interface to the JAGS MCMC library.
rstan <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - R interface to the Stan MCMC software.

Optimization

Packages for Optimization.

lpSolve - Interface to Lp_solve to Solve Linear/Integer Programs.
minqa - Derivative-free optimization algorithms by quadratic approximation.
nloptr - NLopt is a free/open-source library for nonlinear optimization.
ompr - Model mixed integer linear programs in an algebraic way directly in R.
Rglpk - R/GNU Linear Programming Kit Interface
ROI - The R Optimization Infrastructure ('ROI') is a sophisticated framework for handling optimization problems in R.

Finance

Packages for dealing with money.

quantmod <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Quantitative Financial Modelling & Trading Framework for R.
pedquant - Public Economic Data and Quantitative Analysis
TTR - Functions and data to construct technical trading rules with R.
PerformanceAnalytics - Econometric tools for performance and risk analysis.
zoo <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - S3 Infrastructure for Regular and Irregular Time Series.
xts - eXtensible Time Series.
tseries - Time series analysis and computational finance.
fAssets - Analysing and Modelling Financial Assets.
scorecard - Credit Risk Scorecard

Bioinformatics and Biostatistics

Packages for processing biological datasets.

Bioconductor <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - Tools for the analysis and comprehension of high-throughput genomic data.
genetics - Classes and methods for handling genetic data.
gap - An integrated package for genetic data analysis of both population and family data.
ape - Analyses of Phylogenetics and Evolution.
pheatmap - Pretty heatmaps made easy.
lme4 - Generalized mixed-effects models.
nlme - Mixed-effects models, handling user-specified matrix of residual covariance, relevant for the anaysis of repeated observations in longitudinal trials.
glmmTMB - Generalized mixed-effects models, handling user-specified matrix of residual covariance, relevant for the anaysis of repeated observations in longitudinal trials.

Network Analysis

Packages to construct, analyze and visualize network data.

Network Analysis List - Network Analysis related resources.
CRAN Task View NetworkAnalysis - CRAN Task View on network analysis resources
igraph <img class="emoji" alt="heart" src="https://cdn.jsdelivr.net/gh/qinwf/awesome-R@3c66da6e291bcc0520b1649125b0bed750896a9a/heart.png" height="20" align="absmiddle" width="20"> - A collection of network analysis tools.
network - Basic tools to manipulate relational data in R.
sna - Basic network measures and visualization tools.
manynet - Tools for making and modifying many different types of networks.
autograph - Automagic plotting of network graphs and models.
netdiffuseR - Tools for Analysis of Network Diffusion.
networkDynamic - Support for dynamic, (inter)temporal networks.
ndtv - Tools to construct animated visualizations of dynamic network data in various formats.
statnet - The project behind many R network analysis packages.
ergm - Exponential random graph models in R.
latentnet - Latent position and cluster models for network objects.
tnet - Network measures for weighted, two-mode and longitudinal networks.
rgexf - Export network objects from R to GEXF, for manipulation with network software like Gephi or Sigma.
visNetwork - Using vis.js library for network visualization.
tidygraph - A tidy API for graph manipulation

Spatial

truncated — full list on GitHub